PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223596.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 356aa    MW: 40251.7 Da    PI: 8.2657
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223596.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51.1e-1547106155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa a++ a++k++g
  XP_008223596.1  47 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 106
                     57*******************999955656446*************************98 PP

2AP251.23e-16149200155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_008223596.1 149 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 200
                     89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-1247106IPR001471AP2/ERF domain
CDDcd000186.48E-1147116No hitNo description
SuperFamilySSF541713.27E-1747116IPR016177DNA-binding domain
PROSITE profilePS5103220.3148114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1648115IPR001471AP2/ERF domain
SMARTSM003802.8E-2748120IPR001471AP2/ERF domain
PRINTSPR003674.0E-64960IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17149210IPR016177DNA-binding domain
CDDcd000184.22E-24149210No hitNo description
PfamPF008475.6E-12149200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17150209IPR001471AP2/ERF domain
SMARTSM003801.2E-24150214IPR001471AP2/ERF domain
PROSITE profilePS5103218.334150208IPR001471AP2/ERF domain
PRINTSPR003674.0E-6190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAKLSNQKTT AKNNIISNAN AANNTTVTKV KRTRRSVPRD SPPQRSSIYR GVTRHRWTGR  60
YEAHLWDKNC WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGQDTI LNFPLSTYPK  120
ELKEMEGQSR EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT  180
YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKWLKPNG PNNDISGQTN PNAEAILPNV  240
TQNPNDQERG LGFFNNLAYS PGETIVTTQL PRPTTATSAL GLLLQSSKFK EMMEMTTATD  300
SISSQPELNT PQCTFPDDIQ TYFDCQESSS YGEGDDLIFS ELNSFMPPMF QCDFTT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223596.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-118AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLM5XNZ80.0M5XNZ8_PRUPE; Uncharacterized protein
STRINGVIT_11s0037g00870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-102ARIA-interacting double AP2 domain protein